Since the establishment of a pilot area of comprehensive financial reform in Wenzhou，the courts of Wenzhou have，based on judicial functions，set up and improved a system of judicial protection of financial reform，regulated the healthy development of private finance in accordance with the law，strongly advanced the disposal of non-performing assets of banks，actively explored the disposal model of distressed enterprises，and advanced trial works in relation to the financial sector based on the spirit of innovation. With the advancement of financial reform，how to protect innovative financial conduct，to protect financial creditors’rights，and to reduce local financial risks and enterprise risks have become difficult questions challenging the judicial protection of financial reform. In view of the above and in order to protect the financial reform，the courts should improve the linkage mechanism of trial works concerning the financial sector，prefect the case guidance system，normalize the development of private finance，and steadily advance the disposal of non-performing assets and distressed enterprises.