Transport system is the context of city. Smooth traffic and orderly development of transport infrastructure is the primary safeguard in the process of establishing a healthy city. Firstly，this paper examined the concept of traffic disease，urban disease and healthy city，and then explored the transport and urban problems facing the city of Beijing based on historical city evolution data and transport supply and demand data. Lastly，feasible measures and policies were proposed to develop a healthy city with a perspective of synchronous governance of transport and urban disease.